Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIAAMEEELKLLVENLEDKSQETVLS-NVYYSGRYGEHELVLVQSGVGKVMSAMSVAILVESFKVDAIINTGSAGAVATGLNVGDVVVADTLVYHDVDLTAFGYDYGQMSMQPLYFHSDKTFVSTFEAVLSKEEMTSKVGLIATGDSFIAGQEKIDVIKGHFPQVLAVEMEGAAIAQAAQATGKPFVVVRAMSDTAAHDANITFDEFIIEAGKRSAQVLMAFLKAL
3NM4 Chain:B ((3-226))
-KIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERKEFLVSEF-KASAVEMEGASVAFVCQKFGVPCCVLRSISDN-------SFDEFL----EKSAHTSAKFLKSM
General information:
TITO was launched using:
RESULT:
Template:
3NM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158929 for 1845 contacts (-86.1/contact) +
2D Compatibility (PS) -23246 + (NN) -7768 + (LL) 872
1D Compatibility (HY) -17600 + (ID) 3650
Total energy: -210321.0 ( -114.00 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_3NM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NM4-query.scw
PDB file :
Tito_Scwrl_3NM4.pdb
: