Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVVRSIGKKMQRISGPNALAVKGRPTQVYGHTHVRLDCRFMADSEFTAPEVTQLAEGLHRALSKLISMLRRGDPNGAAAGDLTLAQLSILVTLLDQGPIRMTDLAAHERVRTPTTTVAIRRLEKIGLVKRSRDPSDLRAVLVDITPQGRAVHGESLANRRAALAALLSQLPRSDLETLRKALAPLERLASGEPASGPASNSPARKRA
3BJ6 Chain:A ((11-150))
-------------------------------------------------------LYQAVQATRPLLRNITAAVERGTLREGVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRADEMAKLALFSEGFSSVELTAYHKVQLALTRFFADLAK-------------
General information:
TITO was launched using:
RESULT:
Template:
3BJ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46412 for 879 contacts (-52.8/contact) +
2D Compatibility (PS) -15471 + (NN) -9486 + (LL) 3884
1D Compatibility (HY) -3200 + (ID) 1350
Total energy: -72035.0 ( -81.95 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_3BJ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BJ6-query.scw
PDB file :
Tito_Scwrl_3BJ6.pdb
: