Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNNGRMLGVIGGSGFYTFFGS-DTRTVNSDTPYGQPSAPITIGTIGVHDVAFLPRHGAHHQYSAHAVPYRANMWALRALGVRRVFGPCAVGSLDPELEPGAVVVPDQLVDRTSGRADTYFDFGG-VHAAFADPYCPTLRAAVTG-----L---PGVVDGGTMVVIQGPRFSTRAESQWFAAAGCNLVNMTGYPEAVLARELELCYAAIALVTDVDAGVAAGDGVKAADVFAAFGENIELLKRLVRAAIDRVADERTCTHCQHHAGVPLPFELP
4GLJ Chain:A ((12-277))
---NAADIAIIGGSGLYQMQALTNKRSVKIETPYGEPSDDIVLGELNGVTVAFLTRHGQGHRLTPSEVPYRANIYALKTLGVRYIVSVSAVGSLQETLKPLDMVIPDQMIDMTKQRVSTFFGDGAVAHVSMADPLCPEVADILIRAYDNADIADGQCHAKATYVCIEGPQFSTRAESHWYRQMQADIIGMTNMPEAKLAREASIAYATLALVTDFDCWHPNEQAVSADYAIQNLMKNADNAQQVIKQAVALIASEQPKSIAHTALTQAL-----
General information:
TITO was launched using:
RESULT:
Template:
4GLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163605 for 2166 contacts (-75.5/contact) +
2D Compatibility (PS) -27995 + (NN) -18110 + (LL) 304
1D Compatibility (HY) -18400 + (ID) 4850
Total energy: -232656.0 ( -107.41 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_4GLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GLJ-query.scw
PDB file :
Tito_Scwrl_4GLJ.pdb
: