Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRTPATVVAGVDLGDAVFAAAVRAGVARVEQLMDTELRQA-DEVMSDSLLHLFNAGGKRFRPLFTVLSAQI-GPQPDAAAVTVAGAVIEMIHLATLYHDDVMDEAQVRRGAPSANAQWGNNVAILAGDYLLATASRLVARLG--PEAVRIIADTFAQLVTGQMRETRGTSE------------NVDSIEQYLKVVQEKTGSLIGAAGRLGGMFSGATDEQVERLSRLGGVVGTAFQIADDIIDIDSESDESGKLPGTDVREGVHTLP-MLYALRESGPD-CARLRA-LLNGPVDDDAEVREALTLLRASPGMARAKDVLAQYAAQARHELALLPDVPGRRALAALVDYTVSRHG |
4DHD Chain:A ((10-333)) | ---------------------HQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSG--QWRPALPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYG-------EIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVV-EEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNN---GTLKELLDFIVA--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DHD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158603 for 2559 contacts (-62.0/contact) +
2D Compatibility (PS) -32720 + (NN) -19203 + (LL) 1348
1D Compatibility (HY) -12000 + (ID) 4400
Total energy: -225578.0 ( -88.15 by residue)
QMean score : 0.572
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