Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR-------------------------------GRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALGK
4TYQ Chain:B ((1-205))
MNIVLMGLPGAGKGTQAERIVAKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRKLEYVIHIEVRQEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVAKRLEVNMKQMAPLLAFYDSKEVLVNVNGQQDMEKVF---------
General information:
TITO was launched using:
RESULT:
Template:
4TYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54034 for 1305 contacts (-41.4/contact) +
2D Compatibility (PS) -19108 + (NN) -13860 + (LL) 876
1D Compatibility (HY) -17600 + (ID) 4050
Total energy: -107776.0 ( -82.59 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_4TYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TYQ-query.scw
PDB file :
Tito_Scwrl_4TYQ.pdb
: