Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MACERLGGQSGAADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRR-RVGMLFQRPNPFPM-SIMDNV-LAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSD-SPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL--ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVAGLSGDVKDAKRGN |
3TIF Chain:A ((21-226)) | ------------------------------------LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND---LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER---RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NVARFGERIIYLKDGEVERE--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TIF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -86177 for 1550 contacts (-55.6/contact) +
2D Compatibility (PS) -21844 + (NN) -9496 + (LL) 4084
1D Compatibility (HY) -12400 + (ID) 3350
Total energy: -129183.0 ( -83.34 by residue)
QMean score : 0.441
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