Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQ---IIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERG-GGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPM-QQTAMAMFDGALGAGGARSMIARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGTIAALW
2PD6 Chain:B ((5-256))
-----LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLG-NHAAFQADVSEARAARCLLEQVQACFSRPPSV--VVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKIT------EMIP--MGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLF----
General information:
TITO was launched using:
RESULT:
Template:
2PD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176184 for 2062 contacts (-85.4/contact) +
2D Compatibility (PS) -25509 + (NN) -4556 + (LL) 768
1D Compatibility (HY) -17600 + (ID) 4800
Total energy: -227881.0 ( -110.51 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_2PD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PD6-query.scw
PDB file :
Tito_Scwrl_2PD6.pdb
: