Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALIN-------------LDPAAPI------------VVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGHGSSGGHASL
4GV8 Chain:A ((3-155))
--NTLQVRLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVI--ETGKIDAGYHGNLGINIKNDAIASNGYITPGVFDIKGEIDLSDAIRQYGTYQINEGDKLAQLVIVPIWTPELKQVEEFE----S------------------
General information:
TITO was launched using:
RESULT:
Template:
4GV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92330 for 860 contacts (-107.4/contact) +
2D Compatibility (PS) -14018 + (NN) -6381 + (LL) -144
1D Compatibility (HY) -11200 + (ID) 2500
Total energy: -126573.0 ( -147.18 by residue)
QMean score : 0.329
(partial model without unconserved sides chains):
PDB file :
Tito_4GV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GV8-query.scw
PDB file :
Tito_Scwrl_4GV8.pdb
: