Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEPDVAGAPASKPEPASTGAASAAQLSGYSRVLLKLGGEMFGGG-QVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGM-ERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEK-IGTLVTT
4A7W Chain:A ((6-240))
----------------------------KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNII---------IIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK-
General information:
TITO was launched using:
RESULT:
Template:
4A7W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -190250 for 1848 contacts (-102.9/contact) +
2D Compatibility (PS) -24477 + (NN) -11544 + (LL) 1796
1D Compatibility (HY) -23600 + (ID) 4850
Total energy: -252925.0 ( -136.86 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_4A7W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4A7W-query.scw
PDB file :
Tito_Scwrl_4A7W.pdb
: