Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYEGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDS--EDLPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVR-NQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQ-WFLQEQIEEVALMATLVRVADRAGA-----NLFELENFVAREVDVAPAASGAPHAAGGRL
1RCD Chain:A ((6-172))
---RQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGRVFLQSVEKPERDDWANGLEALQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTL--------------------
General information:
TITO was launched using:
RESULT:
Template:
1RCD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49851 for 1199 contacts (-41.6/contact) +
2D Compatibility (PS) -17981 + (NN) -16106 + (LL) 1236
1D Compatibility (HY) -5200 + (ID) 1750
Total energy: -89652.0 ( -74.77 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_1RCD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RCD-query.scw
PDB file :
Tito_Scwrl_1RCD.pdb
: