Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSNGSSSRRTFLRLAALLLPAGALLGSLPGVRAAARPRKLYLAGPDVFRADAVAHGEALKALCAR----YGFEGLYPLDNAL-------PKQLAEPREQAAWIYRANIGLIERADAVLANLNFFRGAEPDSGTAFEVGYATALGKPVYGYVDDAGSYAERIRRHAPELIGEDPTRDRDGMTLEEFGLPLNLMLAVPATLVVGDAEQALRQLASRRHG
1F8X Chain:A ((2-157))
-------------------------------------PKKTIYFGAG-WFTDRQNKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYI---PDEEDVGLGMELGYALSQGKYVLLVI----------------------PDEDYGKPINLMSWGVSDNVIKMSQLKDFNFNKPRFDFYEGAVY
General information:
TITO was launched using:
RESULT:
Template:
1F8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41052 for 1073 contacts (-38.3/contact) +
2D Compatibility (PS) -15493 + (NN) -6911 + (LL) 3456
1D Compatibility (HY) -6000 + (ID) 1150
Total energy: -67150.0 ( -62.58 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1F8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F8X-query.scw
PDB file :
Tito_Scwrl_1F8X.pdb
: