Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRALLLSGCLALVLLTQQAAAQTLL-VVGDSISAA-LGLDTS-QGWVALLQKRLADEGYDYRV--------------VNASISGDTSAGGLARLPALLAEEKPALVVIELGGNDGLRGMAPAQLQQNLASMAQKARAEGAKVLLLGIQLPPNYGPRYIEAFSRVYGAVAAQEKTALVPFFLEGVG----GVQGMMQADGIHPALAAQPRLLENVWPTLKPLL-----
2VPT Chain:A ((4-204))
--------------------KTIKIMPVGDSCTEGMGGG--EMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLNTHNPDVVFLWIGGNDLLLNGNLN--ATGLSNLIDQIFTVKPNVTLFVADYYPWP--EAIKQYNAVIPGIVQQKANAGKKVYFVKLSEIQFDRNTDISWDGLHLSEIGYKKIANIWYKYTIDILRALAG
General information:
TITO was launched using:
RESULT:
Template:
2VPT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93320 for 1424 contacts (-65.5/contact) +
2D Compatibility (PS) -19009 + (NN) -5762 + (LL) 2416
1D Compatibility (HY) -7600 + (ID) 1550
Total energy: -124825.0 ( -87.66 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_2VPT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VPT-query.scw
PDB file :
Tito_Scwrl_2VPT.pdb
: