Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEPNLRGNGKVALVTGAARGIGLGISAWLIAEGWQV-VLADNDRERGARVAE---ALGEHAWFVAMDVAQEGQVAMSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAKYCTP-YLRAHNGAIVNIASTRAHQSEPDSEAYAASKGGLLALTHALAASLGPD-IRVNALSPGWI--DTREAAEREAAPLTELDHDQHLVGRVGTVEDVASLVAWLLSEDAGFVTGQEFLVDGGMTRKMIYLD
3SJ7 Chain:B ((11-250))
----------KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGI--TRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSD-TDALSDE---LKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGM--------
General information:
TITO was launched using:
RESULT:
Template:
3SJ7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141823 for 1941 contacts (-73.1/contact) +
2D Compatibility (PS) -25209 + (NN) -11679 + (LL) 1232
1D Compatibility (HY) -13200 + (ID) 4550
Total energy: -195229.0 ( -100.58 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3SJ7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SJ7-query.scw
PDB file :
Tito_Scwrl_3SJ7.pdb
: