Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGKPVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAKD--G--FVATDGWAEVSEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGIHNLGDIQKLL---DARTPGIIGAITGRAIYEGTLDVAEAQALCDNFKA
2Y88 Chain:A ((3-243))
LILLPAVNVVEGRAVRLVQGKAGSQTE-YGSAVDAALGWQRDGAEWIHLVDLDAAFGR-GSNHELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDG-GDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTH---RGVEGAIVGKALYARRFTLPQALAAVR----
General information:
TITO was launched using:
RESULT:
Template:
2Y88.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -205618 for 2110 contacts (-97.4/contact) +
2D Compatibility (PS) -25881 + (NN) -13858 + (LL) 716
1D Compatibility (HY) -15600 + (ID) 3800
Total energy: -264041.0 ( -125.14 by residue)
QMean score : 0.705
(partial model without unconserved sides chains):
PDB file :
Tito_2Y88.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y88-query.scw
PDB file :
Tito_Scwrl_2Y88.pdb
: