Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKLLALLIMFYSGISVASAPTSWQFGFPAPATEIMEVIVKSHLFVMSVMVTIMLFVWALLAYVMFRFRKSKVTNISKTHHSILLEIVWFVIPTII-VGILAFENAKLLKLQEKIPKADITLKVIGHQWYWSYRYPEYQGVSFDSYI-----KEKDDFVKGDLK-------------LFSVDNNVVLPVNTNVRLQVTAGDVIHSWGVPAFGIKIDAIPGRLNEAWFNVKKPGVYYGQCYELCGQGHGFMPIVIEAVSKEDFNKWIENKKLVS
3DTU Chain:B ((17-256))
--------------------------GFQPSASPVATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVILVAIGAFSLPVLFNQQE-IPEADVTVKVTGYQWYWGYEYPDEE-ISFESYMIGSPATGGDNRMSPEVEQQLIEAGYSRDEFLLATDTAMVVPVNKTVVVQVTGADVIHSWTVPAFGVKQDAVPGRLAQLWFRAEREGIFFGQCSELCGISHAYMPITVKVVSEEAYAAWLEQHHHHH
General information:
TITO was launched using:
RESULT:
Template:
3DTU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146439 for 1496 contacts (-97.9/contact) +
2D Compatibility (PS) -24183 + (NN) -15307 + (LL) 2560
1D Compatibility (HY) -21600 + (ID) 4650
Total energy: -209619.0 ( -140.12 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3DTU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DTU-query.scw
PDB file :
Tito_Scwrl_3DTU.pdb
: