Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------MNIIIIGAQASGKMTIGQEIAKQTGMTLFHNHDSIDFVL----RFMPWSPDSIALTESIRFKFFETFAKTGQKMIF-TIVIDFNDSRDVVFLEKIQTVFQSHNQEVLFVELETELSERLKRNRTENRLKHKPSKRDIKWSENDICLTMDYAIFNPEVAPEALTYYHKINNTCLTATETAYLIIQKINQIKEKN
3NWJ Chain:A ((82-291))
QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAT------YTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDL----------TPAEIAIEAFEQVQSYLEKE
General information:
TITO was launched using:
RESULT:
Template:
3NWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43809 for 1340 contacts (-32.7/contact) +
2D Compatibility (PS) -18876 + (NN) -7012 + (LL) 1212
1D Compatibility (HY) -4000 + (ID) 1200
Total energy: -73685.0 ( -54.99 by residue)
QMean score : 0.337
(partial model without unconserved sides chains):
PDB file :
Tito_3NWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NWJ-query.scw
PDB file :
Tito_Scwrl_3NWJ.pdb
: