Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKD-SNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQRE-AVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRL-NLEAINYMAADGDFKIKCVAFD
4GXL Chain:A ((21-153))
-MPFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGKSKDIALHLNPRLNI----KAFVRNSFLQESWGEEERNITSFPFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGDIHLLEVRSW
General information:
TITO was launched using:
RESULT:
Template:
4GXL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61505 for 968 contacts (-63.5/contact) +
2D Compatibility (PS) -13490 + (NN) -2852 + (LL) 148
1D Compatibility (HY) -8000 + (ID) 2050
Total energy: -87749.0 ( -90.65 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_4GXL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GXL-query.scw
PDB file :
Tito_Scwrl_4GXL.pdb
: