Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQRDHTMDYKESCPSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNTLKKQFPAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPKHQSDPSEDEDERSSQKLHSTSQNINLGPSGNPHAKPTDFDFLKVIGKG-SFGKVLLAKRKLD-GKFYAVKVLQKKIVL-NRKEQKHIMAERNVLLK-NVKHPFLVGLHYSFQTTE-KLYFVLDFVNGGELFFHLQR-ERSFPEHRARFYAAEIASALGYLHSIKIVYRDLKPENILLDSV-GHVVLTDFGLCKEGIAISDTTT--TFCGTPEYLAPEVIRKQ---PYDNTVDWWCLGAVLYEMLYGL-PPFYCRDVAEMYDNILHKPLSL--RPGVSLTAWSILEELLEKDRQNRLGA-KEDFLEIQNHPFFESLS---WADLVQKKIPPPFNPNVAGPDDIRNFDTAFTEETVPYSVCVSSDYSIVNASVLEADDAFVGFSYAPPSEDLFL |
| 1CDK Chain:A ((8-350)) | -----------------------------------------------------------------------------------------------------------------------KGSEQESVKEFLAKAKEDFLKKWENPAQNTA------H-LDQFERIKTLGT-GSFGRVMLVKHKETG-NHFAMKILDKQKVVK-LKQIEHTLNEKRILQAV--NFPFLVKLEYSFKDN-SNLYMVMEYVPGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQ-QGYIQVTDFGFAKRV-K--G--RTWTLCGTPEYLAPEIILS-KGY--NKAVDWWALGVLIYEMAAG-YPPFFADQPIQIYEKIVSGKVRFPS--HFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA---TTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSI---------NEKCG----KEFSEF----------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1CDK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -158846 for 2562 contacts (-62.0/contact) +
2D Compatibility (PS) -35299 + (NN) -18089 + (LL) 10248
1D Compatibility (HY) -25600 + (ID) 6200
Total energy: -233786.0 ( -91.25 by residue)
QMean score : 0.430
|
|
|