Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLNDKSNEITSKLVICPPFTSLP-GNIELNSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERTH---ETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKS---RLPIHGEYTVAYEPIWAIGTGHVPSNNAIAEVIEVIQSYTSKKHV----------IYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
1SSG Chain:B ((5-235))
--FFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGYSLTPQQAQEVHEKLRGWL-KSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEFVDIINAKH----
General information:
TITO was launched using:
RESULT:
Template:
1SSG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118459 for 1726 contacts (-68.6/contact) +
2D Compatibility (PS) -23111 + (NN) -7964 + (LL) 232
1D Compatibility (HY) -14000 + (ID) 4250
Total energy: -167552.0 ( -97.08 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_1SSG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSG-query.scw
PDB file :
Tito_Scwrl_1SSG.pdb
: