Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNLESLPKHLAIIMDGNSRWANSQGRVKID-GYRKGSEVAYDIAKHCIALAIPYLTLYAFSMENWLRPKEETDCLFDLFYSILTDRDKVNFFHNYNIKLNFVGNLSLLPGKILNQIKESEEMTRKNDGLLLTVAVSYGAKQEIIHAVRNITRKN----------IDCVSEDEFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKRYGR
2VG1 Chain:B ((3-228))
------LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVV---EEICAPANH-WSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR------
General information:
TITO was launched using:
RESULT:
Template:
2VG1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161379 for 1749 contacts (-92.3/contact) +
2D Compatibility (PS) -22861 + (NN) -3353 + (LL) 840
1D Compatibility (HY) -14400 + (ID) 3900
Total energy: -205053.0 ( -117.24 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_2VG1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG1-query.scw
PDB file :
Tito_Scwrl_2VG1.pdb
: