Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MIILVQEVVVEGDINLGQFLKTEGIIESGGQAKWFLQDVEVLINGVRETRRGKKLEHQDRIDIPELPEDAGSFLIIHQGEQ
1P9K Chain:A ((1-79))
GSMIHRMSNMATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA------GHSVQVVA---
General information:
TITO was launched using:
RESULT:
Template:
1P9K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21453 for 512 contacts (-41.9/contact) +
2D Compatibility (PS) -7519 + (NN) 524 + (LL) 364
1D Compatibility (HY) -1200 + (ID) 900
Total energy: -30184.0 ( -58.95 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_1P9K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P9K-query.scw
PDB file :
Tito_Scwrl_1P9K.pdb
: