Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYAPHTAENVVQNANKLIDVFRKNNGFIAFVRVNFYDGKDVLQPNAM--ISLPPKEGDDYSRFHHLLDKRDDDFVIDKRHFSAFVGTDLDLQLRRRGIDTIVLGGVATHIGVDTTARDAYQLNYNQFFVTDMMSAQNETLHQFPIDNVFPLMGQTITTNDFLNILN
3TXY Chain:A ((33-193))
-----QSGGDVVAKTAELANAFRARKLPVIFVHTSYQPDGAVALKVKTDVPPSPPNLDPEWSAFAPALGVQPLDVVVTKHQWGAFTGTDLDVQLRRRGITDIVLTGIATNIGVESTAREAYENNYNVVVVSDAVSTWSTDAQTFALTQIFPKLGQVATAADVEAAL-
General information:
TITO was launched using:
RESULT:
Template:
3TXY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76302 for 1138 contacts (-67.0/contact) +
2D Compatibility (PS) -17133 + (NN) -7500 + (LL) 148
1D Compatibility (HY) -8800 + (ID) 2900
Total energy: -112487.0 ( -98.85 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_3TXY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TXY-query.scw
PDB file :
Tito_Scwrl_3TXY.pdb
: