Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASLVSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTVAELLPFGFSGKDLE
3R2N Chain:A ((8-125))
-VNWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATGGG--RLVAVYCVDGNGDSLMPCGRCRQLLYEHGGPE--LKIMTPKG---VQTMAQLLPQ--------
General information:
TITO was launched using:
RESULT:
Template:
3R2N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29806 for 950 contacts (-31.4/contact) +
2D Compatibility (PS) -12787 + (NN) -4721 + (LL) 316
1D Compatibility (HY) -4800 + (ID) 2000
Total energy: -53798.0 ( -56.63 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_3R2N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R2N-query.scw
PDB file :
Tito_Scwrl_3R2N.pdb
: