Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ |
1JJV Chain:A ((1-50)) | --MTYIVGLTGGIGSGKTTIANLFTD-L---GVPLVDADVVAREV------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JJV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -9255 for 162 contacts (-57.1/contact) +
2D Compatibility (PS) -4151 + (NN) -2371 + (LL) 11548
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -8629.0 ( -53.27 by residue)
QMean score : 0.091
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