Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIFINGFGRIGRCVLRAILERNDTNPQLEVIGINDP-ANWEILAYLLEHDSTHGLLNKEVRYSNGKLIIGSLEIPVFNSIK------DLKGVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLY-QNQAIVSNASCTTNAIAPICAILDKAFSIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKDPINDLLITASKGTLKGVLEIDLKERVSSDFISNPNSVIIAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFMYHY |
| 1GPD Chain:R ((2-327)) | -KIGINGFGRIGRLVLRAALSCG-----AQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKMEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVISAP------SADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GPD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192932 for 2715 contacts (-71.1/contact) +
2D Compatibility (PS) -33093 + (NN) 667 + (LL) 372
1D Compatibility (HY) -26400 + (ID) 6900
Total energy: -258286.0 ( -95.13 by residue)
QMean score : 0.326
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