Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDKIIEILQISPIVPVVVVENIKDAVPLAQSLIEGGIPIIEVTLRSNCALEAIELIAKNVPKMRVGAGTILNLTQLEQAQNRGAEFLISPGLTIKLLEHAKKKDM------PLIPGVSSSSEVMQALELGYNALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGGISADNMRSYLALENVVCVGGSWLTPKDLIQNKEWDKITEICKRALALR
3VCR Chain:A ((11-215))
---------NTKPLIPVIVIDDLVHAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKLDGQWQGVFLPGVATASEVMIAAQAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCPTGGISKDNYKEYLGLPNVICAGGSWLTESKLLIEGDWNEVTRRASEIVKLS
General information:
TITO was launched using:
RESULT:
Template:
3VCR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171306 for 1696 contacts (-101.0/contact) +
2D Compatibility (PS) -21775 + (NN) -12452 + (LL) 1208
1D Compatibility (HY) -20400 + (ID) 4450
Total energy: -229175.0 ( -135.13 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_3VCR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VCR-query.scw
PDB file :
Tito_Scwrl_3VCR.pdb
: