Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTMNSVLECKELALYGGSFDPLHKAHLAIIEQTLELLPFVQLIVLPAYQNPFKKPCFLDAKTRFKELERALKGMPRVLLSDFEIKQERAVPTIESVLHFQKLYRPKTLYLVIGADCLRHLSSWTNAKELLKRVELVVFERIGYEEIQFKGRYHPLKGIDAPISSSAIRASLGV
1KAM Chain:A ((1-164))
---------SKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIP--------DSFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFHVETP-YPLLFADVPEFEVSSTMIRERFKS
General information:
TITO was launched using:
RESULT:
Template:
1KAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109107 for 1107 contacts (-98.6/contact) +
2D Compatibility (PS) -16827 + (NN) -7685 + (LL) 1160
1D Compatibility (HY) -10000 + (ID) 1900
Total energy: -144359.0 ( -130.41 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1KAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAM-query.scw
PDB file :
Tito_Scwrl_1KAM.pdb
: