Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVVACSVIGAALAIGLATLGAAIGQGIAVSRATEIIGKNPNAKKEVMGGLFLGLLMIVALMLFALAIAVILLWVNPFI
3ZK1 Chain:R ((9-85))
--IVLGCSAVGAGLAM-IAGLGPGIGEGYAAGKAVESVARQPEARGSIISTMILGQAVAESTGIYSLVIALILLYANPFL
General information:
TITO was launched using:
RESULT:
Template:
3ZK1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54010 for 442 contacts (-122.2/contact) +
2D Compatibility (PS) -8186 + (NN) -6297 + (LL) -40
1D Compatibility (HY) -7600 + (ID) 1450
Total energy: -77583.0 ( -175.53 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_3ZK1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZK1-query.scw
PDB file :
Tito_Scwrl_3ZK1.pdb
: