Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLIMIDALKRASAATINIVMPYYGYARQDRKARSREPITAKLVANLIETAGATRMITLDMHAPQIQGFFDIPIDHLNAVRLLSDYFSERHLGDDLVVVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPVLSGPAMKRIEESPIEKLVVTNSIALPEEKWIDKMEQLSVAALLGEAIVRVHENASVSSLFE
1DKU Chain:A ((9-316))
--------NLKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGKNL-EDIVIVSPDHGGVTRARKLADRLKAPIAIIDKR---------MNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTIKELVVTNSIKLK----IERFKQLSVGPLLAEAIIRVHEQQSVSYLF-
General information:
TITO was launched using:
RESULT:
Template:
1DKU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -285182 for 2512 contacts (-113.5/contact) +
2D Compatibility (PS) -33066 + (NN) -22056 + (LL) 1044
1D Compatibility (HY) -41200 + (ID) 11300
Total energy: -391760.0 ( -155.96 by residue)
QMean score : 0.659
(partial model without unconserved sides chains):
PDB file :
Tito_1DKU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DKU-query.scw
PDB file :
Tito_Scwrl_1DKU.pdb
: