Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNLKKHSERKFDLITVGRACIDLNAVEYNRPMEETMTFSKYVGGSPANIAIGTAKLGLKVGFIGKISDDQHGRFIEKYMRDLAINTDGMVKDTEGRKVGLAFTEIKSPDE-CSILMYRENVADLYLTPEEISEDYIKEARVLLISGTALAQSPS-REAVLKAVSLARKNDVVVAFELDYRPYTWKNSEETAVYYSLVAEQADVIIGTRDEFDMMENQVGGKNEATKAYLFQHQAKIVVIKHGVEGSFAYTKAGETFQAQAYKTKVLKTFGAGDSYASAFLYGLFSDESIETALKYGSAAASIVVSKHSSSDAMPTADEIKALIAQAE |
1V1A Chain:A ((1-302)) | ---------MLEVVTAGEPLVALVPQEPG-HLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFRRA--PGFTGLYLREYLPLGQGRVFYYRKG-SAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSP-EEARGFLERALPGVDLLFLSEEEAELLFGRVE----EA---LRALSAPEVVLKRGAKGAWAFVDG-RRVEGSAFAVEAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVLLK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V1A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -247464 for 3013 contacts (-82.1/contact) +
2D Compatibility (PS) -31959 + (NN) -8011 + (LL) 1212
1D Compatibility (HY) -16400 + (ID) 3650
Total energy: -306272.0 ( -101.65 by residue)
QMean score : 0.490
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