Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSF---NCIERP---AVFLTPSDAVHGTLG---------------VLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAK---EADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
4U6N Chain:A ((8-200))
NVQERIKACFTESIQTQIAAAEALPDAISR-AAMTLVQSLLNGN-KILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIP-SHRSARIQEMHMLTVNCLCDLIDNTL-----------------FP-----------
General information:
TITO was launched using:
RESULT:
Template:
4U6N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80748 for 1325 contacts (-60.9/contact) +
2D Compatibility (PS) -17692 + (NN) -3725 + (LL) 2100
1D Compatibility (HY) -6400 + (ID) 1850
Total energy: -108315.0 ( -81.75 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_4U6N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U6N-query.scw
PDB file :
Tito_Scwrl_4U6N.pdb
: