Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATT--HLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGN--RPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGD-IEANLEKLAKGVLTE
1TQJ Chain:A ((5-223))
-IVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNP----QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP-
General information:
TITO was launched using:
RESULT:
Template:
1TQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173988 for 1796 contacts (-96.9/contact) +
2D Compatibility (PS) -23066 + (NN) -14428 + (LL) -44
1D Compatibility (HY) -18800 + (ID) 4150
Total energy: -234476.0 ( -130.55 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_1TQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TQJ-query.scw
PDB file :
Tito_Scwrl_1TQJ.pdb
: