Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQIELDLP---AYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGLGIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDA---ILEYVKNLDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDA-GFIDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELNL
4B5F Chain:A ((2-253))
LKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKN--EGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVP-GYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVE---
General information:
TITO was launched using:
RESULT:
Template:
4B5F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116309 for 2062 contacts (-56.4/contact) +
2D Compatibility (PS) -26631 + (NN) -10535 + (LL) 296
1D Compatibility (HY) -20000 + (ID) 5350
Total energy: -178529.0 ( -86.58 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_4B5F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B5F-query.scw
PDB file :
Tito_Scwrl_4B5F.pdb
: