Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRAVTYIALKNNIAYEDEKAIAALLQKTV-----IRFEPGEVQQVFVGSENVTEVIRSIEVTNHVSIVAAHPSIREALQERQQVFATEGGIVMDGRDIGTAVLPNAELKIFLLASVEERAERRYKENMAKGFTGDLDQLKKEIEERDHLDYTRTHSPLKKADDAIEVDTTSMSIDQVANKILSLAELKINN
2H92 Chain:A ((3-218))
---AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKT-------EDFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQI---
General information:
TITO was launched using:
RESULT:
Template:
2H92.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104555 for 1702 contacts (-61.4/contact) +
2D Compatibility (PS) -23256 + (NN) -12892 + (LL) 1004
1D Compatibility (HY) -17600 + (ID) 5200
Total energy: -162499.0 ( -95.48 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_2H92.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H92-query.scw
PDB file :
Tito_Scwrl_2H92.pdb
: