Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VSLEEALLFREATVTDLKSIMNVENAAFT--------VPWTEAAFRNEF---IINQYAYYLLAIYKEQVVGYAGVWLVL-------DEGHITNIAIHPDYQGNHYGEALLREMIRVAKERGVVRMTLEVRVSNDVAQGLYKKLGFQDGAIRKNYYPDTKEDALVMWVDL
1Z4E Chain:A ((4-149))
-----HVTIREATEGDLEQMVHMLADDVLGRKRERYEKPLPVS-YVRAFKEIKKDKNNELIVACNGEEIVGMLQVTFTPYLTYQGSWRATIEGVRTHSAARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQRPDALRFYEQLGFKASHEGL-----------------
General information:
TITO was launched using:
RESULT:
Template:
1Z4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95008 for 854 contacts (-111.3/contact) +
2D Compatibility (PS) -13580 + (NN) -2585 + (LL) 1892
1D Compatibility (HY) -4800 + (ID) 1500
Total energy: -115581.0 ( -135.34 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_1Z4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z4E-query.scw
PDB file :
Tito_Scwrl_1Z4E.pdb
: