Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILLESYEEIAAYI--DSTKKVVFFFTADWCPDCQFIYPVMPSIEKDFSDFVFVRVNRDDYIELAQQWNIFGIPSFVVVENGQELGRLVNKNRKTKAEITKFLAEINHK
2VIM Chain:A ((1-103))
MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSG--A-NETKLRETITRHK--
General information:
TITO was launched using:
RESULT:
Template:
2VIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96111 for 731 contacts (-131.5/contact) +
2D Compatibility (PS) -11165 + (NN) -3557 + (LL) 12
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -118371.0 ( -161.93 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_2VIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VIM-query.scw
PDB file :
Tito_Scwrl_2VIM.pdb
: