Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPELPEVETVRKGLERLVVNQEIASITIKVPKMVK-T-DLNDFMISLPGKTIQQVLRRGKYLLFDFGEMVMVSHLRMEGKYLLFPNKVPDNKHFHLYFKLTNGSTLVYQDVRKFGTFELVRKSSLKDYFTQKKLGPEPTADTFQFEPFSKGLANSKKPIKPLLLDQRLVAGLGNIYVDEVLWAAKIHPQRLANQLTESETSLLHKEIIRILTLGIEKGGSTIRTYKNALGEDGTMQKYLQVYGKTGQPCPRCGCLIKKIKVGGRGTHYCPRCQCL
3U6P Chain:A ((1-273))
-PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVM---------------------HLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR-
General information:
TITO was launched using:
RESULT:
Template:
3U6P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131154 for 1994 contacts (-65.8/contact) +
2D Compatibility (PS) -26541 + (NN) -10138 + (LL) 1008
1D Compatibility (HY) -17200 + (ID) 5300
Total energy: -189325.0 ( -94.95 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_3U6P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U6P-query.scw
PDB file :
Tito_Scwrl_3U6P.pdb
: