Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAHIGIIMDGNGRWAKKRLKPRV-MGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAI-----KEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
2VG1 Chain:B ((3-228))
----------------LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEICAP--ANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEEL-VDAVTVEGISENLYTSGQP----DPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR-------
General information:
TITO was launched using:
RESULT:
Template:
2VG1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119186 for 1757 contacts (-67.8/contact) +
2D Compatibility (PS) -24148 + (NN) -14441 + (LL) 2644
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -175081.0 ( -99.65 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_2VG1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG1-query.scw
PDB file :
Tito_Scwrl_2VG1.pdb
: