Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMFKFKKNFLVGLSAALMSISLFSATASAASTDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPT--GTYKGTVKSDGGTYDIYTTTRYNAPSIDGDRTTFTQYWSVRQSKRPTGSNATITFSNHVNAWKSHGMNLGSNWAYQVMATEGYQSSGSSNVTVW
3AKP Chain:B ((14-189))--------------------------------FYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINF-SGSYNPNGNSYLSVYGWSRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGT-ATFYQYWSVRRNHRSSGS---VNTANHFNAWAQQGLTLGT-MDYQIVAVEGYFSSGSASITV-


General information:
TITO was launched using:
RESULT:

Template: 3AKP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1024 -8482 -8.28 -48.74
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain B : 0.79

3D Compatibility (PKB) : -8.28
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.534

(partial model without unconserved sides chains):
PDB file : Tito_3AKP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3AKP-query.scw
PDB file : Tito_Scwrl_3AKP.pdb: