Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRLAVIGAMEEEVT-ILRNKLENAKTETIAHCEFTTGEYEGTEVILLKSGIGKVNAAISTTLLLDRYKPDYVINTGSAGGFHHTLNVGDVVISTDVRHHDVDVTAFDYEYGQVPGLPAAYAADEKLISITEEAVSELDGIQVAKGTIATGDSFMNDPKRVEEVRARFSDLYAVEMEAAAVAQVCHQFKTPFVVIRALSDIAGKESHVSFDQFLEQAAVHSTELVLKVIKRIH
4YO8 Chain:B ((18-239))-KIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANE-QHIALKEGVIASGDQFVHSKERKEFLVSEFKA-SAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSA-HTSAKFLK------


General information:
TITO was launched using:
RESULT:

Template: 4YO8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1306 -15706 -12.03 -71.07
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain B : 0.78

3D Compatibility (PKB) : -12.03
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.448

(partial model without unconserved sides chains):
PDB file : Tito_4YO8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YO8-query.scw
PDB file : Tito_Scwrl_4YO8.pdb: