Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHL-AADLLVALDRNHARLLRQL-GVEAARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLARNGPS
2CWD Chain:A ((2-151))
-DRPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLRRFPEARGKVRLVLEELG-----GGEVQDPYYGDLEDFREVYWTLEAALQAFLDRHG---------
General information:
TITO was launched using:
RESULT:
Template:
2CWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103569 for 1253 contacts (-82.7/contact) +
2D Compatibility (PS) -16485 + (NN) -10466 + (LL) 408
1D Compatibility (HY) -10000 + (ID) 3050
Total energy: -143162.0 ( -114.26 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_2CWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CWD-query.scw
PDB file :
Tito_Scwrl_2CWD.pdb
: