Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEGPKKAGVLGSPIAHSRSPQLHLAAYRALGLHDWTYERIECGAAELPVVVGGFG-PEWVGVSVTMPGKFAALRFADERTARADLVGSANTLVRTPHGWRADNTDIDGVAGALGA-----AAGHALVLGSGGTAPAAVVGLAELGVTDITVVARNSDKAARLV-DLGTRVGVATRFCAFDSGGLADAVAAAEVLVSTIPAEVAAG---YA-GTLAAIPVLLDAIYDPWPTPLAAAVGSAGGRVISGLQMLLHQAFAQVEQFTGLPAPREAMTCALAALD
3DON Chain:A ((1-263))
-----MKFAVIGNPISHSLSPLMHHANFQSLNL-ENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIPHKERIIPYLDDINEQAKSVGAVNTVLVKDGKWIGYNTDGIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINK--------INLSH--AESHLDEFDIIINTTP------DSVISLNRLASHTLVSDIVYNPYKTPILIEAEQRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKAMKNIVIQ--
General information:
TITO was launched using:
RESULT:
Template:
3DON.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159272 for 2033 contacts (-78.3/contact) +
2D Compatibility (PS) -25889 + (NN) -6183 + (LL) 1068
1D Compatibility (HY) -15600 + (ID) 3100
Total energy: -208976.0 ( -102.79 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_3DON.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DON-query.scw
PDB file :
Tito_Scwrl_3DON.pdb
: