Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIDIVTIFPACLD-PLRQSLPGKAIESGLVDLNVHDLRRWTHDVHHSVDDAPYGGGPGMVMKAPVWGEALDEICSSETLLIVPTPAGVLFTQATAQRWTTESHLVFACGRYEGIDQRVVQDAARRMRVEEVSIGDYVLPGGESAAVVMVEAVLRLLAGVLGNPASHQDDSHSTGLDGLLEGPSYTRPASWRGLDVPEVLLSGDHARIAAWRREVSLQRTRERRPDLSHPD
3IEF Chain:A ((3-224))
FQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFA-----SVDDTPAGGGAGMVMRADVLAAALDSCPN-DSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEGVDERIIEAR----ELEEVSIGDYILSGGETAALVLLDAIVRLLPGVMGNEISAKCESFE---NGLLEHPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYAL-
General information:
TITO was launched using:
RESULT:
Template:
3IEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125660 for 1529 contacts (-82.2/contact) +
2D Compatibility (PS) -23855 + (NN) -14715 + (LL) 752
1D Compatibility (HY) -19600 + (ID) 4700
Total energy: -187778.0 ( -122.81 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_3IEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IEF-query.scw
PDB file :
Tito_Scwrl_3IEF.pdb
: