Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTPSQWLDIAVLAVAFIAAISGWRAGALGSMLSFGGVLLGATAGVLLAPHIVSQISAPRAKLFAALFLILALVVVGEVAGVVLGRAVRGAIRNRPIRLIDSVIGVGVQLVVVLTAAWLLAMPLTQSKEQPELAAAVKGSRVLARVNEAAPTWLKTVPKRLSALLNTSGLPAVLEPFSRTPVIPVASPDPALVNNPVVAATEPSVVKIRSLAP-----RCQKVLEGTGFVISPD-RVMTNAHVVAGSNNVTVYAG-DKPFEATVVSYDPSVDVAILAVPHL-PPPPLVFAAE-PAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRADVEQGDSGGPLIDLNGQVLGVVFGAAIDDAETGFVLTAGEVAGQLAKIGATQPVGTGACVS |
| 3NUM Chain:A ((172-368)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS-----NTVTTGIVSTT-----------------DYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT--AGISFAIPSDKIKKFLTESH------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NUM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117486 for 1445 contacts (-81.3/contact) +
2D Compatibility (PS) -18190 + (NN) -2972 + (LL) 16172
1D Compatibility (HY) -11200 + (ID) 2450
Total energy: -136126.0 ( -94.20 by residue)
QMean score : 0.439
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