Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDRYCVFGNPIGHSKSPLIHRLFAEQTGEALVYDAQLAPLDDFPGFARRFF-EQGKGANVTVPFKEEAYRLVDELSERATRAGAVNTLIRLADGRLRGDNTDGAGLLRDLTANAGVELRGKRVLLLGAGGAVRGVLEPFLGECPAELLIANRTARKAVDLAERFADLGAVHGCGFAEV-EGPFDLIVNGTSASLAGDVPPLAQSVIEPGRTVCYDMMYAKEPTAFNRWAAERGAAR-TLDGLGMLVEQAAEAFFLWRGVRPASAPVLETLRRQLATV |
| 1NYT Chain:A ((1-270)) | METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDL-ERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHP-GIYCYDMFYQKGKTPFLAWCEQRGS-KRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELS-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -147544 for 2344 contacts (-62.9/contact) +
2D Compatibility (PS) -28888 + (NN) -12511 + (LL) 364
1D Compatibility (HY) -24000 + (ID) 7050
Total energy: -219629.0 ( -93.70 by residue)
QMean score : 0.534
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