Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSRTWIRNPLAIFTAN-------GLDAAGGLVVEDGRIVELLGAGQQPAQPCASQFDASRHVVLPGLVNTHHHFYQTLTRAWAPVVNQPLFPWLKTLYPVWARLTPEKLELATKVALAELLLSGCTTAADHHYLFPG-GLEQAIDVQAGVVEELGMRAMLTRGSMSLGEKDGGLPPQ-QTVQEAETILADSERLIARYHQRGDGARVQIALAPCS-PFSVTPEIMRASAEVAARHDVRLHTHLAETLDEEDFCLQRFGLRTVDYLDSVGWLGPRTWLAHGIHFNAEEIRRLGEAGTGICHCPSSNMRLASGICPTVELEAAGAPIGLGVDGSASNDASNMILEARQALYLQRLRYGAERITPELALGWATRGSARLLGRSDIGELAPGKQADLALFKLDELRFSGSHDPLSALLLCAA-DRADRVMVGGAWRVVDGAVEGLDLAALIARHRAAASALIAG |
| 2PAJ Chain:A ((10-481)) | -PSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAPR---PGETIVDATDCVIYPAWVNTHHHLFQSLLKGEP----------------FRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETAAVARRLGLRMHSHLS-------------GKSPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQTGTGVAHCPQSNGRL-----PVREMADAGVPVSIGVDGAASNEAADMISEVHMTWLAQRARL----ASIAEVIHWGTAGGARVMGLDEVGKVAVGYAADIAVYRLDDPRYFGLHDPAIGPVASGGRPSVMALFSAGKRVVVDDLIEGVDIKELGGEARRVVRELLRE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PAJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217394 for 3651 contacts (-59.5/contact) +
2D Compatibility (PS) -43980 + (NN) -19948 + (LL) 2704
1D Compatibility (HY) -20400 + (ID) 6850
Total energy: -305868.0 ( -83.78 by residue)
QMean score : 0.568
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