Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRSLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF
1MKA Chain:B ((3-171))
--KRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQDTSAF
General information:
TITO was launched using:
RESULT:
Template:
1MKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130364 for 1320 contacts (-98.8/contact) +
2D Compatibility (PS) -17717 + (NN) -7936 + (LL) 260
1D Compatibility (HY) -22000 + (ID) 5800
Total energy: -183557.0 ( -139.06 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1MKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MKA-query.scw
PDB file :
Tito_Scwrl_1MKA.pdb
: