Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELNLTTDEARVSYGIGRQLGDQLRENPVPGMTLDAVLAGLSDAFAGIDSRVSGEALSASFQVIRERMQAEAQAKAEAAAGEGRAYLAENAKREGVTVLPSGLQFEVLSTGEGAK-PSREDTVRTHYHGTLIDGTVFDSSYQRGQPAEFPVGG--VIAGWVEALQLMNAGSKWRLHVPSELAYGGQA-VGSIPPHSVLVFDVELLEIL
1BL4 Chain:B ((1-106))
------------------------------------------------------------------------------------------------------GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL-
General information:
TITO was launched using:
RESULT:
Template:
1BL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62944 for 728 contacts (-86.5/contact) +
2D Compatibility (PS) -10928 + (NN) -1249 + (LL) 7204
1D Compatibility (HY) -6800 + (ID) 2300
Total energy: -77017.0 ( -105.79 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_1BL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BL4-query.scw
PDB file :
Tito_Scwrl_1BL4.pdb
: