Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLSSEEIIKMLPHRYPFLMVDRV---QSYKKGIIECRKNITINEPYFQGHFPQRPIVPGVLMIEMAAQSAALLYILDALDGSLPSLDELTAEKIAEKVGYLASVKNFKFKKIVTPGDQLNITCKSQSKLGHLLEIQVVIRDENKKEVASGRMLVSENGN
3DOY Chain:D ((15-119))
------EHILQILPHRYPMLLVDRITELQANQK--IVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFL--------AFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
General information:
TITO was launched using:
RESULT:
Template:
3DOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45393 for 597 contacts (-76.0/contact) +
2D Compatibility (PS) -10854 + (NN) -5157 + (LL) 944
1D Compatibility (HY) -12000 + (ID) 2500
Total energy: -74960.0 ( -125.56 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_3DOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DOY-query.scw
PDB file :
Tito_Scwrl_3DOY.pdb
: