Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQFNISDIIKILPHSYPFLLVDRVIECDPSKSIKAIKNVTFNEPFFIGHFPNHPIMPGVLIVESLAQAS---AICILGKGSKSTMENKVVYLMSIENAKFRKPVTPGDTLILQADFKNARLSVCKFECFAYVGEEKVAEATILAMLQNI
3DOY Chain:D ((11-155))
-QFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAER
General information:
TITO was launched using:
RESULT:
Template:
3DOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105980 for 1034 contacts (-102.5/contact) +
2D Compatibility (PS) -15218 + (NN) -3945 + (LL) 208
1D Compatibility (HY) -14800 + (ID) 3300
Total energy: -143035.0 ( -138.33 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_3DOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DOY-query.scw
PDB file :
Tito_Scwrl_3DOY.pdb
: